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using-slurm [2015/03/18 15:43] – aorthusing-slurm [2015/05/11 06:33] – joguya
Line 50: Line 50:
 module load blast/2.2.30+ module load blast/2.2.30+
  
-WORKDIR=/var/scratch/$SLURM_JOBID+WORKDIR=/var/scratch/$USER/$SLURM_JOBID
 mkdir -p $WORKDIR mkdir -p $WORKDIR
  
Line 66: Line 66:
 ==== Check queue status ==== ==== Check queue status ====
 <code>squeue</code> <code>squeue</code>
 +
 +==== Receive mail notifications ====
 +To receive mail notifications about the state of your job, add the following lines to your sbatch script: whereby <EMAIL_ADDRESS> is your email address<code>
 +#SBATCH --mail-user <EMAIL_ADDRESS>
 +#SBATCH --mail-type ALL</code>
 +
 +Notification mail types(--mail-type) can be BEGIN, END, FAIL, REQUEUE and ALL(any state change).
 +
 +
using-slurm.txt · Last modified: 2022/11/03 11:38 by jean-baka