using-slurm
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using-slurm [2014/08/29 06:29] – [Interactive jobs] aorth | using-slurm [2015/03/26 10:16] – aorth | ||
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# load the blast module | # load the blast module | ||
- | module load blast/2.2.28+ | + | module load blast/2.2.30+ |
# run the blast with 4 CPU threads (cores) | # run the blast with 4 CPU threads (cores) | ||
Line 48: | Line 48: | ||
# load the blast module | # load the blast module | ||
- | module load blast/2.2.28+ | + | module load blast/2.2.30+ |
- | WORKDIR=/ | + | WORKDIR=/ |
mkdir -p $WORKDIR | mkdir -p $WORKDIR | ||
echo "Using $WORKDIR on $SLURMD_NODENAME" | echo "Using $WORKDIR on $SLURMD_NODENAME" | ||
echo | echo | ||
+ | |||
+ | # change to working directory on compute node | ||
+ | cd $WORKDIR | ||
# run the blast with 4 CPU threads (cores) | # run the blast with 4 CPU threads (cores) | ||
- | blastn -query ~/ | + | blastn -query ~/ |
- | All output is directed to '' | + | All output is directed to '' |
==== Check queue status ==== | ==== Check queue status ==== | ||
< | < |
using-slurm.txt · Last modified: 2022/11/03 11:38 by jean-baka