ILRI Research Computing

User Tools

Site Tools

You are here: start » using-slurm
using-slurm

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision		Previous revision
Next revisionBoth sides next revision
using-slurm [2013/09/12 13:19] – [Batch jobs] aorthusing-slurm [2013/12/02 14:04] – [Using SLURM] aorth
Line 53: Line 53:
 Trinity.pl --seqType fq --JM 10G --single AR1960BN.fastq --output $WORKDIR/AR1960BN.out --CPU 4 --inchworm_cpu 4 --bflyCPU 4</code> Trinity.pl --seqType fq --JM 10G --single AR1960BN.fastq --output $WORKDIR/AR1960BN.out --CPU 4 --inchworm_cpu 4 --bflyCPU 4</code>
  
-See these slides from [[http://alanorth.github.io/hpc-users-group3/#/2|HPC Users Group #3]] for more info.+All output is directed to ''$WORKDIR/'', which is the temporary folder on the compute node.  See these slides from [[http://alanorth.github.io/hpc-users-group3/#/2|HPC Users Group #3]] for more info.
 ==== Check queue status ==== ==== Check queue status ====
 <code>squeue</code> <code>squeue</code>
using-slurm.txt · Last modified: 2022/11/03 11:38 by jean-baka