unicycler-software
Differences
This shows you the differences between two versions of the page.
| Both sides previous revisionPrevious revisionNext revision | Previous revision | ||
| unicycler-software [2020/01/21 09:37] – [Installation] jean-baka | unicycler-software [2023/06/12 13:17] (current) – aorth | ||
|---|---|---|---|
| Line 4: | Line 4: | ||
| ===== Information ===== | ===== Information ===== | ||
| - | * Version: 0.47.0 | + | * Version: 0.5.0 |
| * Added: February, 2019 | * Added: February, 2019 | ||
| + | * Updated: June, 2023 | ||
| * Link: https:// | * Link: https:// | ||
| ===== Usage ===== | ===== Usage ===== | ||
| - | See versions | + | See versions which are available: |
| < | < | ||
| Load one version into your environment and run it: | Load one version into your environment and run it: | ||
| - | < | + | < |
| $ unicycler</ | $ unicycler</ | ||
| Line 24: | Line 25: | ||
| #SBATCH -J unicycler | #SBATCH -J unicycler | ||
| - | module load unicycler/ | + | module load unicycler/ |
| readonly DATADIR=~/ | readonly DATADIR=~/ | ||
| Line 46: | Line 47: | ||
| < | < | ||
| - | $ wget https:// | + | $ wget https:// |
| - | $ unzip v0.4.7.zip | + | $ tar xf v0.5.0.tar.gz |
| - | $ cd Unicycler-0.4.7 | + | $ cd Unicycler-0.5.0 |
| - | $ sudo yum install centos-release-scl | + | $ module load python/3.8 |
| - | $ sudo yum install devtoolset-6-gcc.x86_64 devtoolset-6-gcc-c++.x86_64 python36 python36-setuptools | + | $ sudo mkdir -p / |
| - | $ scl enable devtoolset-6 bash | + | $ sudo chown aorth / |
| - | $ sudo mkdir -p / | + | $ python3.8 |
| - | $ sudo chown aorth / | + | $ sudo chown -R root:root / |
| - | $ python36 | + | |
| - | $ sudo chown -R root:root / | + | |
| - | + | ||
| - | The devtoolset is used because Unicycler requires a GCC compiler newer than 4.9.1. | + | |
| - | + | ||
| - | Note by JB: way after this install, on 21 Jan 2020, I had to change the header in / | + | |
unicycler-software.1579599423.txt.gz · Last modified: 2020/01/21 09:37 by jean-baka