unicycler-software
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unicycler-software [2019/02/15 18:16] – aorth | unicycler-software [2020/01/21 09:35] – [Installation] jean-baka | ||
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mkdir -p ${OUTDIR} | mkdir -p ${OUTDIR} | ||
- | # run unicycler with the number of threads | + | # run unicycler with the number of threads |
unicycler -t ${SLURM_NTASKS} -1 ${DATADIR}/ | unicycler -t ${SLURM_NTASKS} -1 ${DATADIR}/ | ||
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echo | echo | ||
echo " | echo " | ||
+ | |||
+ | By default Unicycler will use four CPU threads. Please make sure to set this parameter properly according to the SLURM job request. | ||
===== Installation ====== | ===== Installation ====== | ||
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The devtoolset is used because Unicycler requires a GCC compiler newer than 4.9.1. | The devtoolset is used because Unicycler requires a GCC compiler newer than 4.9.1. | ||
+ | |||
+ | Note by JB: way after this install, on 21 Jan 2020, I had to change the header in / | ||
+ | $ # | ||
+ | to | ||
+ | $ # | ||
+ | because there is no (no longer?) python36 in the $PATH. |
unicycler-software.txt · Last modified: 2023/06/12 13:17 by aorth