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unicycler-software [2019/02/15 18:16] – aorthunicycler-software [2019/02/15 18:36] – aorth
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 mkdir -p ${OUTDIR} mkdir -p ${OUTDIR}
  
-# run unicycler with the number of threads requested by SLURM+# run unicycler with the number of threads allocated by SLURM
 unicycler -t ${SLURM_NTASKS} -1 ${DATADIR}/short_reads_1.fastq.gz -2 ${DATADIR}/short_reads_2.fastq.gz -o ${OUTDIR} unicycler -t ${SLURM_NTASKS} -1 ${DATADIR}/short_reads_1.fastq.gz -2 ${DATADIR}/short_reads_2.fastq.gz -o ${OUTDIR}
  
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 echo echo
 echo "  ${OUTDIR}"</code> echo "  ${OUTDIR}"</code>
 +
 +By default Unicycler will use four CPU threads. Please make sure to set this parameter properly according to the SLURM job request.
  
 ===== Installation ====== ===== Installation ======
unicycler-software.txt · Last modified: 2023/06/12 13:17 by aorth