unicycler-software
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unicycler-software [2019/02/15 18:07] – created aorth | unicycler-software [2020/01/21 09:38] – [Installation] jean-baka | ||
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=== Example Batch Job === | === Example Batch Job === | ||
- | < | + | < |
+ | #SBATCH -p batch | ||
+ | #SBATCH -n 4 | ||
+ | #SBATCH -J unicycler | ||
+ | |||
+ | module load unicycler/ | ||
+ | |||
+ | readonly DATADIR=~/ | ||
+ | readonly OUTDIR=/ | ||
+ | |||
+ | # create output directory on compute node | ||
+ | mkdir -p ${OUTDIR} | ||
+ | |||
+ | # run unicycler with the number of threads allocated by SLURM | ||
+ | unicycler -t ${SLURM_NTASKS} -1 ${DATADIR}/ | ||
+ | |||
+ | echo | ||
+ | echo " | ||
+ | echo | ||
+ | echo " | ||
+ | |||
+ | By default Unicycler will use four CPU threads. Please make sure to set this parameter properly according to the SLURM job request. | ||
===== Installation ====== | ===== Installation ====== | ||
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The devtoolset is used because Unicycler requires a GCC compiler newer than 4.9.1. | The devtoolset is used because Unicycler requires a GCC compiler newer than 4.9.1. | ||
+ | |||
+ | Note by JB: way after this install, on 21 Jan 2020, I had to change the header in / |
unicycler-software.txt · Last modified: 2023/06/12 13:17 by aorth