ILRI Research Computing

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====== UMI-tools ======

Tools for dealing with Unique Molecular Identifiers.

===== Information =====

  * Version: 0.2.3
  * Added: August, 2016
  * Link: https://github.com/CGATOxford/UMI-tools

===== Usage =====

See which versions of umi-tools are available:
<code>$ module avail umi-tools</code>

Load umi-tools
<code>$ module load umi-tools/0.2.3</code>

===== Installation ======

Notes from the sysadmin during installation:

<code>
$ cd /tmp
$ wget https://github.com/CGATOxford/UMI-tools/archive/v0.2.3.tar.gz
$ tar -xvf v0.2.3.tar.gz
$ cd UMI-tools-0.2.3
$ scl enable devtoolset-2 bash
$ module load samtools/1.3 bcftools/1.3 htslib/1.3
$ sudo chown -R joguya:joguya /export/apps/python/2.7.8
$ python setup.py build
$ python setup.py install
$ sudo mkdir -p /export/apps/umi-tools/0.2.3
$ sudo ln -s /export/apps/python/2.7.8/bin/umi_tools /export/apps/umi-tools/0.2.3/umi_tools
$ sudo chown -R root:root /export/apps/python/2.7.8
</code>