ILRI Research Computing

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====== Trinotate ======
Trinotate is a comprehensive annotation suite designed for automatic functional annotation of transcriptomes, particularly de novo assembled transcriptomes, from model or non-model organisms.

===== Information =====

  * Version: 2.0.2
  * Added: June, 2015
  * Updated: June, 2015
  * Link: https://trinotate.github.io/

===== Usage =====

See versions of trinotate which are available:
<code>$ module avail trinotate</code>

> **NOTE**
> Trinotate.sqlite Pre-generated Resource SQLite database that contains Uniprot(swissprot and uniref90)-related annotation information is available in ///export/apps/trinotate/2.0.2/// folder.
> Therefore, you DO NOT need to download a new one!

===== Installation ======
Notes from the sysadmin during installation:

<code>
$ cd /tmp
$ wget https://github.com/Trinotate/Trinotate/archive/v2.0.2.tar.gz
$ tar -xvf v2.0.2.tar.gz
$ cd Trinotate-2.0.2/
$ scl enable devtoolset-2 bash
$ sudo mkdir -p /export/apps/trinotate/2.0.2
$ sudo cp -r . /export/apps/trinotate/2.0.2
</code>