trinity-software
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trinity-software [2018/03/27 16:00] – aorth | trinity-software [2020/10/28 11:28] (current) – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Latest Version: v2.6.6 | + | * Latest Version: v2.11.0 |
* Added: March, 2015 | * Added: March, 2015 | ||
- | * Updated: | + | * Updated: |
* Link: https:// | * Link: https:// | ||
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Load one version into your environment and run it: | Load one version into your environment and run it: | ||
- | < | + | < |
$ Trinity</ | $ Trinity</ | ||
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< | < | ||
- | $ wget https:// | + | $ wget https:// |
- | $ tar xf Trinityrnaseq-v2.6.6.wExtSampleData.tar.gz | + | $ tar xf trinityrnaseq-v2.11.0.FULL.tar.gz |
- | $ cd Trinityrnaseq-v2.6.6 | + | $ cd trinityrnaseq-v2.11.0 |
+ | $ sed -i ' | ||
$ make | $ make | ||
$ make plugins | $ make plugins | ||
- | $ sudo yum install numpy | + | $ sudo yum install |
- | $ sudo mkdir / | + | $ sudo mkdir -p / |
- | $ make test_trinity | + | $ sudo cp -r . / |
- | $ sudo cp -r . / | + | $ export TRINITY_HOME=/ |
+ | $ module load samtools/ | ||
+ | $ cd sample_data/ | ||
+ | $ ./runMe.sh</ | ||
- | Consult the [[https:// | + | Consult the [[https:// |
trinity-software.1522166450.txt.gz · Last modified: 2018/03/27 16:00 by aorth