trinity-software
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trinity-software [2015/07/31 12:15] – joguya | trinity-software [2016/01/28 10:31] – joguya | ||
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===== Information ===== | ===== Information ===== | ||
- | * Version: v2.0.6 | + | * Latest |
+ | * Updated: January, 2016 | ||
* Added: March, 2015 | * Added: March, 2015 | ||
* Link: https:// | * Link: https:// | ||
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See versions of trinity which are available: | See versions of trinity which are available: | ||
- | < | + | < |
**Note:** | **Note:** | ||
- | * You should use the **\\-\\-full_cleanup** option so that Trinity can clean up after itself by removing all the intermediary files it has created except for the final Trinity.fasta results file. | + | * You should use the **−−full_cleanup** option so that Trinity can clean up after itself by removing all the intermediary files it has created except for the final Trinity.fasta results file. |
* Trinity creates millions of small files -- which causes problems on the HPC storage server -- so you must direct output from these jobs to /// | * Trinity creates millions of small files -- which causes problems on the HPC storage server -- so you must direct output from these jobs to /// | ||
#SBATCH -p highmem | #SBATCH -p highmem | ||
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#SBATCH -n 8 | #SBATCH -n 8 | ||
- | module load trinity/v2.0.6 | + | module load trinity/v2.1.1 |
module load bowtie/ | module load bowtie/ | ||
module load samtools/ | module load samtools/ | ||
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< | < | ||
- | $ wget " | + | $ wget " |
- | $ tar -xvf trinity-v2.0.6.tar.gz | + | $ tar -xvf v2.1.1.tar.gz |
- | $ cd trinityrnaseq-2.0.6/ | + | $ cd trinityrnaseq-2.1.1 |
$ scl enable devtoolset-2 bash | $ scl enable devtoolset-2 bash | ||
$ CC=clang make | $ CC=clang make | ||
$ CC=clang make plugins | $ CC=clang make plugins | ||
- | $ sudo mkdir / | + | $ sudo mkdir / |
- | $ cp -r * / | + | $ sudo cp -r . / |
- | $ sudo chown -R root:root / | + | </ |
trinity-software.txt · Last modified: 2020/10/28 11:28 by aorth