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trinity-software [2015/07/31 12:15] – joguyatrinity-software [2015/07/31 12:17] – joguya
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 **Note:** **Note:**
-  * You should use the **\\-\\-full_cleanup** option so that Trinity can clean up after itself by removing all the intermediary files it has created except for the final Trinity.fasta results file.+  * You should use the **−−full_cleanup** option so that Trinity can clean up after itself by removing all the intermediary files it has created except for the final Trinity.fasta results file.
   * Trinity creates millions of small files -- which causes problems on the HPC storage server -- so you must direct output from these jobs to ///var/scratch// instead of your home folder. For example:<code>#!/bin/env bash   * Trinity creates millions of small files -- which causes problems on the HPC storage server -- so you must direct output from these jobs to ///var/scratch// instead of your home folder. For example:<code>#!/bin/env bash
 #SBATCH -p highmem #SBATCH -p highmem
trinity-software.txt · Last modified: 2020/10/28 11:28 by aorth