trinity-software
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trinity-software [2015/07/31 11:59] – joguya | trinity-software [2015/07/31 12:17] – joguya | ||
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**Note:** | **Note:** | ||
- | * You should | + | * You should use the **−−full_cleanup** option so that Trinity can clean up after itself by removing all the intermediary files it has created except for the final Trinity.fasta results file. |
* Trinity creates millions of small files -- which causes problems on the HPC storage server -- so you must direct output from these jobs to /// | * Trinity creates millions of small files -- which causes problems on the HPC storage server -- so you must direct output from these jobs to /// | ||
#SBATCH -p highmem | #SBATCH -p highmem | ||
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# match CPUs to amount requested in SBATCH options! | # match CPUs to amount requested in SBATCH options! | ||
- | Trinity --seqType fq --max_memory 10G --left fish_R1.fastq --right fish_R2.fastq --CPU 8 --output trinity-fish2</ | + | Trinity --seqType fq --max_memory 10G --left fish_R1.fastq --right fish_R2.fastq --CPU 8 --output trinity-fish2 |
===== Installation ====== | ===== Installation ====== | ||
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: |
trinity-software.txt · Last modified: 2020/10/28 11:28 by aorth