trinity-software
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trinity-software [2015/03/24 17:02] – aorth | trinity-software [2015/03/24 17:03] – aorth | ||
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# cd to working dir just in case | # cd to working dir just in case | ||
- | export WORKDIR=$SLURM_JOBID | + | export WORKDIR=/ |
+ | mkdir -p $WORKDIR | ||
cd $WORKDIR | cd $WORKDIR | ||
# match CPUs to amount requested in SBATCH options! | # match CPUs to amount requested in SBATCH options! | ||
Trinity --seqType fq --max_memory 10G --left fish_R1.fastq --right fish_R2.fastq --CPU 8 --output trinity-fish2</ | Trinity --seqType fq --max_memory 10G --left fish_R1.fastq --right fish_R2.fastq --CPU 8 --output trinity-fish2</ | ||
+ | |||
===== Installation ====== | ===== Installation ====== | ||
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | $ sudo su - provisioning | + | |
- | $ cd src | + | |
$ wget " | $ wget " | ||
$ tar -xvf trinity-v2.0.6.tar.gz | $ tar -xvf trinity-v2.0.6.tar.gz | ||
Line 45: | Line 45: | ||
$ sudo chown -R provisioning: | $ sudo chown -R provisioning: | ||
$ cp -r * / | $ cp -r * / | ||
- | $ sudo chown -R root:root / | + | $ sudo chown -R root:root / |
- | </ | + |
trinity-software.txt · Last modified: 2020/10/28 11:28 by aorth