trinity-software
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trinity-software [2015/03/24 08:00] – [Installation] joguya | trinity-software [2015/03/24 17:02] – aorth | ||
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#SBATCH -p highmem | #SBATCH -p highmem | ||
#SBATCH -J trinity | #SBATCH -J trinity | ||
- | #SBATCH -n 10 | + | #SBATCH -n 8 |
- | module load trinity/ | + | module load trinity/ |
module load bowtie/ | module load bowtie/ | ||
module load samtools/ | module load samtools/ | ||
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# match CPUs to amount requested in SBATCH options! | # match CPUs to amount requested in SBATCH options! | ||
- | Trinity --seqType fq --max_memory 10G --left fish_R1.fastq --right fish_R2.fastq --CPU 10 --output trinity-fish2</ | + | Trinity --seqType fq --max_memory 10G --left fish_R1.fastq --right fish_R2.fastq --CPU 8 --output trinity-fish2</ |
===== Installation ====== | ===== Installation ====== | ||
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: |
trinity-software.txt · Last modified: 2020/10/28 11:28 by aorth