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trimmomatic-software [2021/09/05 11:05] – aorthtrimmomatic-software [2021/09/05 11:10] (current) – aorth
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 ===== Information ===== ===== Information =====
  
-  * Version: 0.38+  * Version: 0.39
   * Added: September, 2015   * Added: September, 2015
-  * Updated: June, 2018+  * Updated: September, 2021
   * Link: https://github.com/usadellab/Trimmomatic   * Link: https://github.com/usadellab/Trimmomatic
  
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 Load one version into your environment and run it: Load one version into your environment and run it:
-<code>$ module load trimmomatic/0.38+<code>$ module load trimmomatic/0.39
 $ trimmomatic</code> $ trimmomatic</code>
  
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 <code>$ cd /tmp <code>$ cd /tmp
-$ wget http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.38.zip +$ wget http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.39.zip 
-$ unzip Trimmomatic-0.38.zip +$ unzip Trimmomatic-0.39.zip 
-$ sudo mkdir -p /export/apps/trimmomatic/0.38 +$ sudo mkdir -p /export/apps/trimmomatic/0.39 
-$ sudo cp -r Trimmomatic-0.38/* /export/apps/trimmomatic/0.38</code>+$ sudo cp -r Trimmomatic-0.39/* /export/apps/trimmomatic/0.39</code>
  
 Trimmomatic is distributed as a jar file and is not easy for users to run. I created a wrapper shell script named ''trimmomatic'': Trimmomatic is distributed as a jar file and is not easy for users to run. I created a wrapper shell script named ''trimmomatic'':
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 readonly PREFIX=$(dirname $0) readonly PREFIX=$(dirname $0)
-java -jar $PREFIX/trimmomatic-0.38.jar $*</code>+java -jar $PREFIX/trimmomatic-0.39.jar $*</code>
trimmomatic-software.1630839923.txt.gz · Last modified: by aorth