trimmomatic-software
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trimmomatic-software [2018/06/01 23:03] – aorth | trimmomatic-software [2021/09/05 11:10] (current) – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Version: 0.38 | + | * Version: 0.39 |
* Added: September, 2015 | * Added: September, 2015 | ||
- | * Updated: | + | * Updated: |
- | * Link: http://www.usadellab.org/cms/? | + | * Link: https://github.com/usadellab/Trimmomatic |
===== Usage ===== | ===== Usage ===== | ||
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Load one version into your environment and run it: | Load one version into your environment and run it: | ||
- | < | + | < |
$ trimmomatic</ | $ trimmomatic</ | ||
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< | < | ||
- | $ wget http:// | + | $ wget http:// |
- | $ unzip Trimmomatic-0.38.zip | + | $ unzip Trimmomatic-0.39.zip |
- | $ sudo mkdir -p / | + | $ sudo mkdir -p / |
- | $ sudo cp -r Trimmomatic-0.38/* / | + | $ sudo cp -r Trimmomatic-0.39/* / |
Trimmomatic is distributed as a jar file and is not easy for users to run. I created a wrapper shell script named '' | Trimmomatic is distributed as a jar file and is not easy for users to run. I created a wrapper shell script named '' | ||
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readonly PREFIX=$(dirname $0) | readonly PREFIX=$(dirname $0) | ||
- | java -jar $PREFIX/ | + | java -jar $PREFIX/ |
trimmomatic-software.txt · Last modified: 2021/09/05 11:10 by aorth