Differences

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--- trf-software [2015/02/14 19:47] – created aorth
+++ trf-software [2020/11/01 13:43] (current) – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Version: 4.0.4
+  * Version: 4.0.9
   * Added: February, 2015
-  * Link: http://tandem.bu.edu/trf/trf.html
+  * Updated: November, 2020
+  * Link: https://github.com/Benson-Genomics-Lab/TRF
 ===== Usage =====
-=== See versions of trf which are available ===
+See versions of trf which are available:
-<code>module avail trf</code>
+<code>$ module avail trf</code>
+Load one version into your environment and run it:
+<code>$ module load trf/4.0.9
+$ trf</code>
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>$ cd /tmp
+<code>$ wget https://github.com/Benson-Genomics-Lab/TRF/releases/download/v4.09.1/trf409.linux64
-$ wget http://tandem.bu.edu/trf/downloads/trf404.linux64
+$ chmod +x trf409.linux64
-$ sudo mkdir -p /export/apps/trf/4.0.4/bin
+$ sudo mkdir -p /export/apps/trf/4.0.9/bin
-$ sudo cp trf404.linux64 /export/apps/trf/4.0.4/bin
+$ sudo cp trf409.linux64 /export/apps/trf/4.0.9/bin
-$ sudo chmod +x /export/apps/trf/4.0.4/bin/trf404.linux64</code>
+$ sudo ln -s /export/apps/trf/4.0.9/bin/trf409.linux64 /export/apps/trf/4.0.9/bin/trf</code>