tophat-software
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tophat-software [2014/10/17 08:22] – created joguya | tophat-software [2015/07/23 09:33] – [Installation] joguya | ||
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* Link: http:// | * Link: http:// | ||
+ | ===== v2.0.11 ===== | ||
+ | * Version: 2.0.11 | ||
+ | * Link: http:// | ||
+ | |||
+ | ==== Usage ==== | ||
+ | * show available versions: < | ||
+ | |||
+ | ---------------------------------------------------------------------------------------------- / | ||
+ | tophat2/ | ||
+ | </ | ||
+ | * load v2.0.13:< | ||
+ | * show help info:< | ||
+ | |||
+ | ===== v2.0.13 ===== | ||
+ | * Version: 2.0.13 | ||
+ | * Added: October, 2014 | ||
+ | * Link: http:// | ||
+ | * Changelog: | ||
+ | * removed SAMtools as an external dependency in order to avoid incompatibility issues with recent and future changes of SAMtools and its code library (an older, stable SAMtools version is now packaged with TopHat) | ||
+ | * fixed a few code compatibility issues when compiling on OSX 10.9 | ||
- | ===== 2.0.13 ===== | ||
==== Usage ==== | ==== Usage ==== | ||
* show available versions: < | * show available versions: < | ||
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> **NOTE** | > **NOTE** | ||
> Older versions of tophat2 required SAMtools to be loaded/ | > Older versions of tophat2 required SAMtools to be loaded/ | ||
+ | |||
* < | * < | ||
tar -xvf tophat-2.0.13.Linux_x86_64.tar.gz | tar -xvf tophat-2.0.13.Linux_x86_64.tar.gz | ||
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* deploy using ansible< | * deploy using ansible< | ||
+ | ===== v2.1.0 ===== | ||
+ | * Version: 2.1.0 | ||
+ | * Added: July, 2015 | ||
+ | * Link: http:// | ||
+ | |||
+ | === Installation === | ||
+ | * Tophat2 is already compiled, just download the tarball & copy content to / | ||
+ | tar -xvf tophat-2.1.0.Linux_x86_64.tar.gz | ||
+ | cd tophat-2.1.0.Linux_x86_64/ | ||
+ | sudo mkdir / | ||
+ | sudo cp -r . / | ||
+ | </ | ||
tophat-software.txt · Last modified: 2015/07/23 09:38 by joguya