ILRI Research Computing

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====== subread ======
Subread package: high-performance read alignment, quantification and mutation discovery

===== Information =====

  * Latest version: 1.6.2
  * Added: August, 2018
  * Link: http://subread.sourceforge.net/

===== Usage =====

See versions of subread which are available:
<code>$ module avail subread</code>

Load one version into your environment and run it:
<code>$ module load subread/1.6.2
$ subread-buildindex
$ featureCounts</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ wget 'https://downloads.sourceforge.net/project/subread/subread-1.6.2/subread-1.6.2-Linux-x86_64.tar.gz?r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Fsubread%2Ffiles%2Fsubread-1.6.2%2Fsubread-1.6.2-Linux-x86_64.tar.gz%2Fdownload&ts=1535020028' -O subread-1.6.2-Linux-x86_64.tar.gz
$ tar xf subread-1.6.2-Linux-x86_64.tar.gz
$ sudo mkdir -p /export/apps/subread/1.6.2
$ sudo cp -r subread-1.6.2-Linux-x86_64/* /export/apps/subread/1.6.2/</code>