structure-software
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| Both sides previous revisionPrevious revisionNext revision | Previous revision | ||
| structure-software [2017/02/21 08:36] – [Sample Script] joguya | structure-software [2022/06/13 08:37] (current) – aorth | ||
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| * Latest version: 2.3.4 | * Latest version: 2.3.4 | ||
| * Added: June, 2014 | * Added: June, 2014 | ||
| - | * Link: http://pritchardlab.stanford.edu/ | + | * Link: https://web.stanford.edu/ |
| ===== Usage ===== | ===== Usage ===== | ||
| - | See which versions | + | See which versions are available: |
| < | < | ||
| - | Load structure | + | Load one version into your environment and run it: |
| - | < | + | < |
| + | $ structure</ | ||
| ==== Sample Script ===== | ==== Sample Script ===== | ||
| - | Here's a script to run structure using SLURM job scheduler whereby each structure iteration is submitted as a separate SLURM batch job: | + | Here's a script to run structure using the SLURM job scheduler whereby each structure iteration is submitted as a separate SLURM batch job: |
| - | < | + | < |
| - | #!/bin/env bash | + | |
| ## shell script to run structure in the background using SLURM job scheduler | ## shell script to run structure in the background using SLURM job scheduler | ||
| Line 106: | Line 106: | ||
| done | done | ||
| - | done | + | done</ |
| - | </ | + | |
| Usage: | Usage: | ||
| - | < | + | < |
| - | ./ | + | |
| - | </ | + | ===== Installation ===== |
| + | Notes from the sysadmin during installation: | ||
| + | |||
| + | < | ||
| + | $ wget https:// | ||
| + | $ tar xf structure_kernel_source.tar.gz | ||
| + | $ cd structure_kernel_src | ||
| + | $ make | ||
| + | $ sudo cp structure / | ||
structure-software.1487666204.txt.gz · Last modified: 2017/02/21 08:36 by joguya