stringtie-software
Differences
This shows you the differences between two versions of the page.
Next revision | Previous revision | ||
stringtie-software [2014/07/22 13:02] – created aorth | stringtie-software [2018/06/11 15:52] (current) – aorth | ||
---|---|---|---|
Line 1: | Line 1: | ||
====== stringtie ====== | ====== stringtie ====== | ||
+ | StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. | ||
===== Information ===== | ===== Information ===== | ||
- | * Version: | + | * Version: |
* Added: July, 2014 | * Added: July, 2014 | ||
- | * Link: http:// | + | |
+ | | ||
===== Usage ===== | ===== Usage ===== | ||
- | === See versions of stringtie which are available | + | See versions of stringtie which are available: |
- | < | + | < |
+ | |||
+ | Load the latest version into your environment and print help: | ||
+ | < | ||
+ | $ stringtie -h</ | ||
===== Installation ====== | ===== Installation ====== | ||
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | tar xf stringtie-0.97.tar.gz | + | $ wget http:// |
- | cd stringtie-0.97 | + | $ tar xf stringtie-1.3.4d.tar.gz |
- | scl enable devtoolset-1.1 bash | + | $ cd stringtie-1.3.4d |
- | sed -i ' | + | $ make release |
- | sed -i ' | + | $ sudo mkdir -p / |
- | make release | + | $ sudo cp stringtie |
- | sudo mkdir -p / | + | $ sudo cp README LICENSE |
- | sudo cp stringtie | + |
stringtie-software.1406034173.txt.gz · Last modified: 2014/07/22 13:02 by aorth