ILRI Research Computing

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====== staramr ======
Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

===== Information =====

  * Version: 0.11.0
  * Added: February, 2025
  * Link: https://github.com/phac-nml/staramr

===== Usage =====

See versions that are available:
<code>$ module avail staramr</code>

Load one version into your environment and run it:
<code>$ module load staramr/0.11.0
$ staramr db info</code>


===== Installation ======
Notes from the sysadmin during installation.

<code>$ module load python/3.10
$ sudo mkdir -p /export/apps/staramr/0.11.0
$ sudo chown aorth /export/apps/staramr/0.11.0
$ python3 -m venv /export/apps/staramr/0.11.0
$ source /export/apps/staramr/0.11.0/bin/activate
$ pip install -U pip setuptools wheel
$ pip install staramr==0.11.0
$ sudo chown -R root /export/apps/staramr/0.11.0</code>