star-software
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star-software [2016/03/24 14:00] – created joguya | star-software [2022/06/02 13:44] (current) – aorth | ||
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====== STAR ====== | ====== STAR ====== | ||
- | + | STAR (Spliced Transcripts Alignment to a Reference) is an RNA-seq aligner. | |
- | STAR(Spliced Transcripts Alignment to a Reference) is an RNA-seq aligner. | + | |
===== Information ===== | ===== Information ===== | ||
- | * Version: | + | * Version: 2.7.10a |
* Added: March, 2016 | * Added: March, 2016 | ||
- | * Link: https:// | + | |
+ | | ||
===== Usage ===== | ===== Usage ===== | ||
- | See which versions | + | See which versions are available: |
- | < | + | < |
- | Load STAR | + | Load one version into your environment and run it: |
- | < | + | < |
+ | $ STAR</ | ||
===== Installation ====== | ===== Installation ====== | ||
Line 21: | Line 22: | ||
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | $ cd /tmp | + | $ wget https://github.com/alexdobin/STAR/ |
- | $ wget http://soap.genomics.org.cn/down/SOAPsplice-v1.10.tar.gz | + | $ tar xf 2.7.10a.tar.gz |
- | $ tar -xvf SOAPsplice-v1.10.tar.gz | + | $ sudo mkdir -p / |
- | $ cd SOAPsplice-v1.10 | + | $ sudo cp -v STAR-2.7.10a/ |
- | $ sudo mkdir -p / | + | |
- | $ sudo cp -r . / | + | |
- | </ | + |
star-software.1458828035.txt.gz · Last modified: 2016/03/24 14:00 by joguya