Differences

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--- star-software [2016/11/24 07:31] – joguya
+++ star-software [2019/07/17 12:41] – aorth
@@ Line 1: / Line 1: @@
 ====== STAR ======
+STAR (Spliced Transcripts Alignment to a Reference) is an RNA-seq aligner.
-STAR(Spliced Transcripts Alignment to a Reference) is an RNA-seq aligner.
 ===== Information =====
-  * Version: 2.5.2b
+  * Version: 2.7.1a
   * Added: March, 2016
-  * Updated: November, 2016
+  * Updated: July, 2019
-  * Link: https://github.com/alexdobin/STAR/
+  * Link: https://github.com/alexdobin/STAR
 ===== Usage =====
-See which versions of STAR are available:
+See which versions of star are available:
-<code>$ module avail STAR</code>
+<code>$ module avail star</code>
-Load STAR
+Load one into your environment and run it:
-<code>$ module load STAR/2.5.2b</code>
+<code>$ module load star/2.7.1a
+$ STAR</code>
 ===== Installation ======
@@ Line 22: / Line 22: @@
 Notes from the sysadmin during installation:
-<code>
+<code>$ cd /tmp
-$ cd /tmp
+$ wget https://github.com/alexdobin/STAR/archive/2.7.1a.tar.gz
-$ git clone --recursive https://github.com/alexdobin/STAR.git
+$ tar xf 2.7.1a.tar.gz
-$ cd STAR/source
+$ sudo mkdir -p /export/apps/star/2.7.1a/bin
-$ scl enable devtoolset-2 bash
+$ sudo cp -v STAR-2.7.1a/bin/Linux_x86_64_static/* /export/apps/star/2.7.1a/bin</code>
-$ make
-$ sudo mkdir /export/apps/star/2.5.2b/
-$ sudo cp -rv ../bin/Linux_x86_64/ /export/apps/star/2.5.2b/
-</code>