Differences

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--- star-software [2016/03/24 14:00] – created joguya
+++ star-software [2019/07/17 12:41] – aorth
@@ Line 1: / Line 1: @@
 ====== STAR ======
+STAR (Spliced Transcripts Alignment to a Reference) is an RNA-seq aligner.
-STAR(Spliced Transcripts Alignment to a Reference) is an RNA-seq aligner.
 ===== Information =====
-  * Version: 1.2.1
+  * Version: 2.7.1a
   * Added: March, 2016
-  * Link: https://github.com/alexdobin/STAR/
+  * Updated: July, 2019
+  * Link: https://github.com/alexdobin/STAR
 ===== Usage =====
-See which versions of STAR are available:
+See which versions of star are available:
-<code>$ module avail STAR</code>
+<code>$ module avail star</code>
-Load STAR
+Load one into your environment and run it:
-<code>$ module load STAR/1.2.1</code>
+<code>$ module load star/2.7.1a
+$ STAR</code>
 ===== Installation ======
@@ Line 21: / Line 22: @@
 Notes from the sysadmin during installation:
-<code>
+<code>$ cd /tmp
-$ cd /tmp
+$ wget https://github.com/alexdobin/STAR/archive/2.7.1a.tar.gz
-$ wget http://soap.genomics.org.cn/down/SOAPsplice-v1.10.tar.gz
+$ tar xf 2.7.1a.tar.gz
-$ tar -xvf SOAPsplice-v1.10.tar.gz
+$ sudo mkdir -p /export/apps/star/2.7.1a/bin
-$ cd SOAPsplice-v1.10
+$ sudo cp -v STAR-2.7.1a/bin/Linux_x86_64_static/* /export/apps/star/2.7.1a/bin</code>
-$ sudo mkdir -p /export/apps/SOAPsplice/1.10
-$ sudo cp -r . /export/apps/SOAPsplice/1.10/
-</code>