ILRI Research Computing

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====== stacks ======
Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform.

  * Version: 2.62
  * Added: February, 2015
  * Updated: January, 2023
  * Link: http://creskolab.uoregon.edu/stacks/manual

=== Usage ===

Show all available versions:

<code>$ module avail stacks</code>

Load one version into your environment and run it:

<code>$ module load stacks/2.62
$ sstacks</code>

=== Installation ===

Notes from the systems administrator during installation:

<code>$ cd /tmp
$ wget http://catchenlab.life.illinois.edu/stacks/source/stacks-2.62.tar.gz
$ tar xf stacks-2.62.tar.gz
$ ./configure --prefix=/export/apps/stacks/2.62
$ make
$ sudo mkdir -p /export/apps/stacks/2.62
$ sudo chown aorth /export/apps/stacks/2.62
$ make install</code>