ILRI Research Computing

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====== SRA Toolkit ======

A collection of tools and libraries for using data in the INSDC Sequence Read Archives.

===== Information =====

  * Latest version: 2.10.0
  * Added: August, 2014
  * Updated: December, 2019
  * Link: https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software

===== Usage =====

See versions of SRAToolkit which are available:
<code>$ module avail sratoolkit</code>

Load one version into your environment:
<code>$ module load sratoolkit/2.10.0</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ wget http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.10.0/sratoolkit.2.10.0-centos_linux64.tar.gz
$ tar xf sratoolkit.2.10.0-centos_linux64.tar.gz
$ sudo mkdir -p /export/apps/sratoolkit/2.10.0
$ sudo cp -r sratoolkit.2.10.0-centos_linux64/* /export/apps/sratoolkit/2.10.0</code>