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squirrel-software [2025/05/21 11:52] – created aorthsquirrel-software [2025/05/22 12:22] (current) – aorth
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 # From: https://github.com/aineniamh/squirrel/blob/1.1.2/environment.yml # From: https://github.com/aineniamh/squirrel/blob/1.1.2/environment.yml
 $ python -m pip install snakemake==7.32 $ python -m pip install snakemake==7.32
 +$ python -m pip install pulp==2.7.0 # See: https://github.com/snakemake/snakemake/issues/2607
 +$ sed -i 's/iqtree  -s/iqtree2  -s/' squirrel/scripts/*.smk # See: https://github.com/aineniamh/squirrel/issues/73
 $ python -m pip install . $ python -m pip install .
 $ mkdir -p /export/apps/squirrel/1.1.2/lib/R/x86_64-pc-linux-gnu-library/4.3 $ mkdir -p /export/apps/squirrel/1.1.2/lib/R/x86_64-pc-linux-gnu-library/4.3
squirrel-software.1747828324.txt.gz · Last modified: by aorth