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spades-software [2022/02/21 17:48] – aorthspades-software [2022/09/20 07:38] (current) – aorth
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 ===== Information ===== ===== Information =====
  
-  * Version: 3.15 (3.15.4)+  * Version: 3.15 (3.15.5)
   * Added: September, 2014   * Added: September, 2014
-  * Updated: February, 2022+  * Updated: September, 2022
   * Link: https://github.com/ablab/spades   * Link: https://github.com/ablab/spades
  
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 <code>$ cd /tmp <code>$ cd /tmp
-$ wget https://github.com/ablab/spades/releases/download/v3.15.4/SPAdes-3.15.4.tar.gz +$ wget https://github.com/ablab/spades/releases/download/v3.15.5/SPAdes-3.15.5-Linux.tar.gz 
-$ tar xf SPAdes-3.15.4.tar.gz  +$ tar xf SPAdes-3.15.5-Linux.tar.gz 
-$ cd SPAdes-3.15.4 +$ sudo mv /export/apps/spades/3.15 /export/apps/spades/3.15.bak 
-$ sudo chown aorth /export/apps/spades/3.15 +$ sed -i '1s/python/python3/' SPAdes-3.15.5-Linux/bin/spades.py 
-$ sudo mkdir -p /export/apps/spades/3.15 +$ sudo cp -r SPAdes-3.15.5-Linux /export/apps/spades/3.15</code>
-$ scl enable devtoolset-7 bash +
-$ module load python/3.9 +
-$ sed -i 's/^cmake/cmake3/' spades_compile.sh +
-$ PREFIX=/export/apps/spades/3.15 ./spades_compile.sh -j 4 +
-$ sudo chown -R root:root /export/apps/spades/3.15</code>+
  
 Note: if you get the error ''Exception caught basic_string::_S_construct null not valid'' you need to call the spades.py script, not the spades binary! Note: if you get the error ''Exception caught basic_string::_S_construct null not valid'' you need to call the spades.py script, not the spades binary!
spades-software.1645465709.txt.gz · Last modified: 2022/02/21 17:48 by aorth