sourmash-software
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| Next revision | Previous revision | ||
| sourmash-software [2017/05/30 14:13] – created aorth | sourmash-software [2019/01/29 12:19] (current) – aorth | ||
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| Line 6: | Line 6: | ||
| * Version: 1.0 | * Version: 1.0 | ||
| * Added: May, 2017 | * Added: May, 2017 | ||
| + | * Updated: January, 2019 | ||
| * Link: https:// | * Link: https:// | ||
| ===== Usage ===== | ===== Usage ===== | ||
| - | See versions of spades | + | See versions of sourmash |
| < | < | ||
| + | Load one version into your environment and run it: | ||
| + | < | ||
| + | $ sourmash</ | ||
| ===== Installation ====== | ===== Installation ====== | ||
| Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
| - | < | + | < |
| - | $ sudo chown aorth / | + | $ sudo mkdir -p / |
| - | $ scl enable devtoolset-2 bash | + | $ sudo chown aorth / |
| - | $ module load python/3.5.3 | + | |
| $ python -m venv / | $ python -m venv / | ||
| $ . / | $ . / | ||
| + | $ pip install --upgrade pip setuptools | ||
| $ pip install Cython | $ pip install Cython | ||
| $ pip install jupyter jupyter_client ipython pandas matplotlib scipy scikit-learn khmer | $ pip install jupyter jupyter_client ipython pandas matplotlib scipy scikit-learn khmer | ||
| + | $ sudo yum install gcc-c++ | ||
| $ pip install sourmash | $ pip install sourmash | ||
| $ sudo chown -R root:root / | $ sudo chown -R root:root / | ||
sourmash-software.1496153612.txt.gz · Last modified: by aorth