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--- soapdenovo2-software [2014/10/09 13:08] – created aorth
+++ soapdenovo2-software [2018/04/11 14:22] (current) – aorth
@@ Line 1: / Line 1: @@
 ====== SOAPdenovo2 ======
+SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for the human-sized genomes.
 ===== Information =====
-  * Version: r240
+  * Version: git-c4d2f5ee
   * Added: October, 2014
+  * Updated: April, 2018
   * Link: http://soap.genomics.org.cn/soapdenovo.html
 ===== Usage =====
-=== See versions of SOAPdenovo2 which are available ===
+See versions of SOAPdenovo2 which are available:
-<code>module avail SOAPdenovo2</code>
+<code>$ module avail SOAPdenovo2</code>
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>cd /tmp
+<code>$ cd /tmp
-wget 'http://downloads.sourceforge.net/project/soapdenovo2/SOAPdenovo2/src/r240/SOAPdenovo2-src-r240.tgz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fsoapdenovo2%2Ffiles%2FSOAPdenovo2%2Fsrc%2Fr240%2F&ts=1412858518&use_mirror=cznic' -O SOAPdenovo2-src-r240.tgz
+$ git clone https://github.com/aquaskyline/SOAPdenovo2.git
-tar xf SOAPdenovo2-src-r240.tgz
+$ cd SOAPdenovo2
-cd SOAPdenovo2-src-r240
+$ make
-make
+$ sudo mkdir -p /export/apps/SOAPdenovo2/git-c4d2f5ee/bin
-sudo mkdir -p /export/apps/SOAPdenovo2/r240/bin
+$ sudo cp SOAPdenovo-* /export/apps/SOAPdenovo2/git-c4d2f5ee/bin
-sudo cp SOAPdenovo-* /export/apps/SOAPdenovo2/r240/bin
+$ sudo cp LICENSE VERSION /export/apps/SOAPdenovo2/git-c4d2f5ee</code>
-sudo cp MANUAL LICENSE VERSION /export/apps/SOAPdenovo2/r240</code>