ILRI Research Computing

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====== SOAPdenovo-Trans ======

SOAPdenovo-Trans is a de novo transcriptome assembler inherited from the SOAPdenovo2 framework, designed for assembling transcriptome with alternative splicing and different expression level.

===== Information =====

  * Version: 1.03
  * Added: January, 2017
  * Link: http://sourceforge.net/projects/soapdenovotrans/

===== Usage =====

See which versions of SOAPdenovo-Trans are available:
<code>$ module avail SOAPdenovo-Trans</code>

Load SOAPdenovo-Trans
<code>$ module load SOAPdenovo-Trans/1.03</code>

===== Installation ======

Notes from the sysadmin during installation:
<code>
$ cd /tmp
$ wget "http://downloads.sourceforge.net/project/soapdenovotrans/SOAPdenovo-Trans/bin/v1.03/SOAPdenovo-Trans-bin-v1.03.tar.gz?r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Fsoapdenovotrans%2Ffiles%2FSOAPdenovo-Trans%2F&ts=1484115057&use_mirror=liquidtelecom" -O /tmp/SOAPdenovo-Trans-bin-v1.03.tar.gz
$ tar -xvf SOAPdenovo-Trans-bin-v1.03.tar.gz 
$ sudo mkdir -p /export/apps/SOAPdenovo-Trans/1.03/
$ sudo mv SOAPdenovo-Trans-127mer SOAPdenovo-Trans-31mer MANUAL VERSION LICENSE /export/apps/SOAPdenovo-Trans/1.03/
</code>