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shasta-software [2020/03/15 11:11]
aorth
shasta-software [2020/03/15 11:19] (current)
aorth
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 ===== Information ===== ===== Information =====
  
-  * Version: 0.3.0+  * Version: 0.4.0
   * Added: September, 2019   * Added: September, 2019
-  * Updated: November2019+  * Updated: March2020
   * Link: https://github.com/chanzuckerberg/shasta   * Link: https://github.com/chanzuckerberg/shasta
  
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 Load one version into your environment and run it: Load one version into your environment and run it:
-<code>$ module load shasta/0.3.0+<code>$ module load shasta/0.4.0
 $ shasta</code> $ shasta</code>
  
-**Note:** Please use the ''- -threads'' option to limit the number of threads launched by shasta to be the same amount as in your SLURM sbatch allocation. See the [[https://chanzuckerberg.github.io/shasta/CommandLineOptions.html|shasta documentation for more information]]. +**Note:** Please use the ''%%--threads%%'' option to limit the number of threads launched by shasta to be the same amount as in your SLURM sbatch allocation. See the [[https://chanzuckerberg.github.io/shasta/CommandLineOptions.html|shasta documentation for more information]]. 
  
 ===== Installation ====== ===== Installation ======
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 <code>$ cd /tmp <code>$ cd /tmp
-$ sudo mkdir -p /export/apps/shasta/0.3.0/bin +$ sudo mkdir -p /export/apps/shasta/0.4.0/bin 
-$ sudo chown aorth /export/apps/shasta/0.3.0/bin +$ sudo wget https://github.com/chanzuckerberg/shasta/releases/download/0.4.0/shasta-Linux-0.4.0 -O /export/apps/shasta/0.4.0/bin/shasta 
-wget https://github.com/chanzuckerberg/shasta/releases/download/0.3.0/shasta-Linux-0.3.0 -O /export/apps/shasta/0.3.0/bin/shasta +sudo chmod +x /export/apps/shasta/0.4.0/bin/shasta</code>
-$ chmod +x /export/apps/shasta/0.2.0/bin/shasta +
-$ sudo chown root:root /export/apps/shasta/0.3.0/bin/shasta</code>+
shasta-software.1584270704.txt.gz · Last modified: 2020/03/15 11:11 by aorth