ILRI Research Computing

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====== seqqs ======
Seqqs (SEQuence Quality Statistics, pronounced "seeks") is a C library for quickly gathering quality statistics from sequence files.

===== Information =====

  * Version: git-3d053750
  * Added: March, 2015
  * Link: https://github.com/vsbuffalo/seqqs

===== Usage =====

=== See versions of seqqs which are available ===
<code>$ module avail seqqs</code>

=== Load a module and run seqqs ===
<code>$ module load seqqs/git-3d053750
$ seqqs in.fq</code>
===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd ~/src/git
$ git clone https://github.com/vsbuffalo/seqqs.git
$ cd seqqs
$ sed -i 's/CC = gcc/CC = clang/' Makefile
$ sudo mkdir -p /export/apps/seqqs/git-3d053750/bin
$ sudo cp pairs seqqs /export/apps/seqqs/git-3d053750/bin
$ sudo cp README.md /export/apps/seqqs/git-3d053750</code>

**Note:** Developer uses clang, so let's also use it.