Differences

This shows you the differences between two versions of the page.

--- seqkit-software [2018/02/21 07:20] – created aorth
+++ seqkit-software [2019/11/19 13:04] (current) – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Version: 0.7.2
+  * Version: 0.11.0
   * Added: February, 2018
+  * Updated: November, 2019
   * Link: http://bioinf.shenwei.me/seqkit
@@ Line 14: / Line 15: @@
 Load one version into your environment and run it:
-<code>$ module load seqkit/0.7.2
+<code>$ module load seqkit/0.11.0
 $ seqkit</code>
+**N.B.**: Please use the ''-j'' option to set the number of CPU threads used by seqkit to be the same as the number of CPUs requested in your SLURM SBATCH parameters.
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>$ wget https://github.com/shenwei356/seqkit/releases/download/v0.7.2/seqkit_linux_amd64.tar.gz
+<code>$ cd /tmp
+$ wget https://github.com/shenwei356/seqkit/releases/download/v0.11.0/seqkit_linux_amd64.tar.gz
 $ tar xf seqkit_linux_amd64.tar.gz
-$ sudo mkdir -p /export/apps/seqkit/0.7.2/bin
+$ sudo mkdir -p /export/apps/seqkit/0.11.0/bin
-$ sudo cp seqkit /export/apps/seqkit/0.7.2/bin</code>
+$ sudo cp seqkit /export/apps/seqkit/0.11.0/bin</code>