Differences

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--- seqkit-software [2018/02/21 07:20] – created aorth
+++ seqkit-software [2026/07/14 06:11] (current) – external edit 127.0.0.1
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Version: 0.7.2
+  * Version: 2.12.0
   * Added: February, 2018
+  * Updated: February, 2026
   * Link: http://bioinf.shenwei.me/seqkit
 ===== Usage =====
-See versions of seqkit which are available:
+See which versions are available:
 <code>$ module avail seqkit</code>
 Load one version into your environment and run it:
-<code>$ module load seqkit/0.7.2
+<code>$ module load seqkit/2.12.0
 $ seqkit</code>
+**N.B.**: Please use the ''-j'' option to set the number of CPU threads used by seqkit to be the same as the number of CPUs requested in your SLURM SBATCH parameters.
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>$ wget https://github.com/shenwei356/seqkit/releases/download/v0.7.2/seqkit_linux_amd64.tar.gz
+<code>$ wget https://github.com/shenwei356/seqkit/releases/download/v2.12.0/seqkit_linux_amd64.tar.gz
 $ tar xf seqkit_linux_amd64.tar.gz
-$ sudo mkdir -p /export/apps/seqkit/0.7.2/bin
+$ sudo mkdir -p /export/apps/seqkit/2.12.0/bin
-$ sudo cp seqkit /export/apps/seqkit/0.7.2/bin</code>
+$ sudo cp seqkit /export/apps/seqkit/2.12.0/bin</code>