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sepp-software [2021/12/28 13:41] – [Usage] aorthsepp-software [2021/12/28 13:49] (current) – aorth
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 <code>$ module load sepp/4.5.1 <code>$ module load sepp/4.5.1
 $ run_sepp.py -h</code> $ run_sepp.py -h</code>
 +
 +The general command for running SEPP is:
 +
 +<code>run_sepp.py -t <tree_file> -a <alignment_file> -f <fragment_file> -r <raxml_info_file> -A <alignment_set_size> -P <placement_set_size></code>
 +
 +**Note:** please use the "-x" or "--cpu" options to set the number of CPUs for your SEPP run. This number should match the number of CPUs requested in your SBATCH allocation. 
  
 ===== Installation ====== ===== Installation ======
sepp-software.1640698916.txt.gz · Last modified: by aorth