samtools-software
Differences
This shows you the differences between two versions of the page.
| Both sides previous revisionPrevious revision | |||
| samtools-software [2025/03/03 07:12] – aorth | samtools-software [2025/12/05 07:16] (current) – aorth | ||
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| samtools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format. | samtools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format. | ||
| - | * Latest Version: 1.17 | + | * Latest Version: 1.22.1 |
| * Added: February, 2015 | * Added: February, 2015 | ||
| - | * Updated: | + | * Updated: |
| * Link: http:// | * Link: http:// | ||
| Line 13: | Line 13: | ||
| Load one version into your environment and run it: | Load one version into your environment and run it: | ||
| - | < | + | < |
| $ samtools</ | $ samtools</ | ||
| Line 20: | Line 20: | ||
| < | < | ||
| - | $ wget https:// | + | $ wget https:// |
| - | $ tar xf samtools-1.17.tar.bz2 | + | $ tar xf samtools-1.22.1.tar.bz2 |
| - | $ cd samtools-1.17 | + | $ cd samtools-1.22.1 |
| - | $ ./configure --enable-plugins --enable-libcurl --prefix=/ | + | $ ./configure --enable-plugins --enable-libcurl --prefix=/ |
| $ make | $ make | ||
| - | $ sudo mkdir -p / | + | $ sudo mkdir -p / |
| - | $ sudo chown aorth / | + | $ sudo chown aorth / |
| $ make install | $ make install | ||
| - | $ sudo chown -R root:root / | + | $ sudo chown -R root:root / |
| - | Note: this links against htslib/1.17, which is installed as a module. As of 1.17 this was compiled on CentOS | + | Note: this links against htslib/1.22.1, which is installed as a module. As of 1.22.1 this was compiled on CentOS |
samtools-software.1740985941.txt.gz · Last modified: by aorth