Differences

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--- samtools-software [2021/01/17 10:22] – aorth
+++ samtools-software [2021/09/05 10:32] – aorth
@@ Line 2: / Line 2: @@
 samtools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
-  * Latest Version: 1.11
+  * Latest Version: 1.13
   * Added: February, 2015
-  * Updated: January, 2021
+  * Updated: September, 2021
   * Link: http://www.htslib.org
@@ Line 14: / Line 14: @@
 Load a particular version of samtools into your environment and run it:
-<code>$ module load samtools/1.11
+<code>$ module load samtools/1.13
 $ samtools</code>
@@ Line 21: / Line 21: @@
 <code>$ cd /tmp
-$ wget https://github.com/samtools/samtools/releases/download/1.11/samtools-1.11.tar.bz2
+$ wget https://github.com/samtools/samtools/releases/download/1.13/samtools-1.13.tar.bz2
-$ tar xf samtools-1.11.tar.bz2
+$ tar xf samtools-1.13.tar.bz2
-$ cd samtools-1.11
+$ cd samtools-1.13
 # install a newer compiler from Red Hat software collections
 $ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-gfortran devtoolset-7-libquadmath-devel devtoolset-7-gcc-c++
 $ scl enable devtoolset-7 bash
-$ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/samtools/1.11 --with-htslib=/export/apps/htslib/1.11
+$ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/samtools/1.13 --with-htslib=/export/apps/htslib/1.13
 $ make
-$ sudo mkdir -p /export/apps/samtools/1.11
+$ sudo mkdir -p /export/apps/samtools/1.13
-$ sudo chown aorth /export/apps/samtools/1.11
+$ sudo chown aorth /export/apps/samtools/1.13
 $ make install
-$ sudo chown -R root:root /export/apps/samtools/1.11</code>
+$ sudo chown -R root:root /export/apps/samtools/1.13</code>
-This links against htslib/1.11, which is installed as a module.
+This links against htslib/1.13, which is installed as a module.