samtools-software
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samtools-software [2015/06/09 16:41] – aorth | samtools-software [2018/06/01 19:31] – aorth | ||
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samtools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format. | samtools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format. | ||
- | * Version: 1.2 | + | * Latest |
* Added: February, 2015 | * Added: February, 2015 | ||
- | * Link: http:// | + | |
+ | | ||
- | ==== Usage ==== | + | ===== Usage ===== |
Show all available versions of samtools: | Show all available versions of samtools: | ||
Line 13: | Line 14: | ||
Load a particular version of samtools: | Load a particular version of samtools: | ||
- | < | + | < |
- | ==== Installation ==== | + | ===== Installation |
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | $ git clone git@github.com:samtools/ | + | $ wget https://github.com/samtools/ |
- | $ cd samtools | + | $ tar xf samtools-1.8.tar.bz2 |
- | $ git checkout | + | $ cd samtools-1.8 |
- | $ sudo mkdir -p / | + | $ ./configure --enable-plugins --enable-libcurl --prefix=/ |
- | $ sudo chown joguya: | + | |
$ make | $ make | ||
- | $ make prefix=/ | + | $ sudo mkdir / |
- | $ sudo chown -R root:root / | + | $ sudo chown aorth: |
+ | $ make install | ||
+ | $ sudo chown -R root:root / | ||
+ | |||
+ | This links against a system-wide version of htslib/1.8. |
samtools-software.txt · Last modified: 2022/06/23 09:35 by aorth