Differences

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--- rsem-software [2018/11/18 08:00] – aorth
+++ rsem-software [2025/07/22 18:50] (current) – aorth
@@ Line 2: / Line 2: @@
 RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data.
-  * Version: 1.3.1
+  * Version: 1.3.3
   * Added: February, 2015
-  * Updated: November, 2018
+  * Updated: July, 2025
   * Link: https://deweylab.github.io/RSEM/
@@ Line 12: / Line 12: @@
 <code>$ module avail RSEM</code>
-Load one version into your environment and run it:
+Load one version into your environment:
-<code>$ module load RSEM/1.3.1</code>
+<code>$ module load RSEM/1.3.3</code>
 === Installation ===
 Notes from the sysadmin during installation:
-<code>$ cd /tmp
+<code>$ cd /var/scratch
-$ wget https://github.com/deweylab/RSEM/archive/v1.3.1.tar.gz
+$ wget https://github.com/deweylab/RSEM/archive/v1.3.3.tar.gz
-$ tar xf v1.3.1.tar.gz
+$ tar xf v1.3.3.tar.gz
-$ cd RSEM-1.3.1
+$ cd RSEM-1.3.3
-$ sudo yum install gcc-c++
 $ make
-$ sudo mkdir -p /export/apps/RSEM/1.3.1
+$ sudo mkdir -p /export/apps/RSEM/1.3.3
-$ sudo chown aorth /export/apps/RSEM/1.3.1
+$ sudo chown aorth /export/apps/RSEM/1.3.3
-$ make prefix=/export/apps/RSEM/1.3.1 install
+$ make prefix=/export/apps/RSEM/1.3.3 install
-$ sudo chown -R root:root /export/apps/RSEM/1.3.1</code>
+$ sudo chown -R root:root /export/apps/RSEM/1.3.3</code>