ILRI Research Computing

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====== rRNASelector ======
rRNASelector selects rRNA genes from metagenomic and metatranscriptomic sequences.

===== Information =====

  * Version: 1.1
  * Added: December, 2015
  * Link: http://www.ezbiocloud.net/sw/rrnaselector

===== Usage =====

See versions of rRNASelector which are available:
<code>$ module avail rrnaselector</code>

Load and run rRNASelector:
<code>$ module load rrnaselector/1.1
$ rnaselector</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ wget "http://www.ezbiocloud.net/mod_download_sw.jsp?key=rrnaselector&fn=rRNASelector_for_linux.zip" -O rRNASelector_for_linux.zip
$ unzip  rRNASelector_for_linux.zip
$ sudo mkdir -p /export/apps/rrnaselector/1.1/
$ sudo cp -r . /export/apps/rrnaselector/1.1/
</code>

I created a wrapper shell script named ''rnaselector'' to run RNASelector, otherwise, you'll have to specify the path to ''RNASelector.jar'', which is not always friendly & easy to most users.
''/export/apps/rrnaselector/1.1/rnaselector''
<code>
#!/usr/bin/env bash

readonly PREFIX=$(dirname $0)
java -jar $PREFIX/RNAselector.jar $*
</code>