User Tools

Site Tools


rmblast-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Next revision
Previous revision
rmblast-software [2015/02/14 10:48] – created aorthrmblast-software [2021/03/16 13:18] (current) aorth
Line 4: Line 4:
 ===== Information ===== ===== Information =====
  
-  * Version: 2.2.28+  * Version: 2.11.0
   * Added: February, 2015   * Added: February, 2015
 +  * Updated: March, 2021
   * Link: http://repeatmasker.org/RMBlast.html   * Link: http://repeatmasker.org/RMBlast.html
  
 ===== Usage ===== ===== Usage =====
  
-=== See versions of rmblast which are available === +See versions of rmblast which are available: 
-<code>module avail rmblast</code>+<code>module avail rmblast</code> 
 + 
 +Load one version into your environment and run it: 
 +<code>$ module load rmblast/2.11.0 
 +$ blastn</code>
  
 ===== Installation ====== ===== Installation ======
Line 17: Line 22:
  
 <code>$ cd /tmp <code>$ cd /tmp
-$ wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/rmblast/LATEST/ncbi-rmblastn-2.2.28-x64-linux.tar.gz +$ wget http://www.repeatmasker.org/rmblast-2.11.0+-x64-linux.tar.gz 
-$ tar xf ncbi-rmblastn-2.2.28-x64-linux.tar.gz +$ tar xf rmblast-2.11.0+-x64-linux.tar.gz 
-$ sudo cp -r ncbi-rmblastn-2.2.28 /export/apps/rmblast/2.2.28</code>+$ sudo cp -r rmblast-2.11./export/apps/rmblast/2.11.0</code>
rmblast-software.1423910917.txt.gz · Last modified: 2015/02/14 10:48 by aorth