Differences

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--- resfinder-software [2025/03/04 08:17] – created aorth
+++ resfinder-software [2025/05/16 14:52] (current) – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Version: 4.6.0
+  * Version: 4.7.2
   * Added: March, 2025
+  * Updated: May, 2025
   * Link: https://pypi.org/project/resfinder
@@ Line 14: / Line 15: @@
 Load one version into your environment and run it:
-<code>$ module load resfinder/4.6.0
+<code>$ module load resfinder/4.7.2
 $ python -m resfinder</code>
@@ Line 21: / Line 22: @@
 Notes from the sysadmin during installation.
-<code>$ sudo mkdir -p /export/apps/resfinder/4.6.0
+<code>$ sudo mkdir -p /export/apps/resfinder/4.7.2
-$ sudo chown aorth:aorth /export/apps/resfinder/4.6.0
+$ sudo chown aorth /export/apps/resfinder/4.7.2
-$ python3 -m venv /export/apps/resfinder/4.6.0
+$ module load python/3.10
-$ source /export/apps/resfinder/4.6.0/bin/activate
+$ python -m venv /export/apps/resfinder/4.7.2/.venv
-$ python3 -m pip install -U pip setuptools wheel
+$ source /export/apps/resfinder/4.7.2/.venv/bin/activate
-$ python3 -m pip install resfinder==4.6.0
+$ python -m pip install resfinder==4.7.2
 $ cd /var/scratch
 $ git clone https://bitbucket.org/genomicepidemiology/resfinder_db
 $ git clone https://bitbucket.org/genomicepidemiology/pointfinder_db
 $ git clone https://bitbucket.org/genomicepidemiology/disinfinder_db
-$ cp -r *_db /export/apps/resfinder/4.6.0
+$ sudo cp -r *_db /export/apps/resfinder/4.7.2
-$ sudo chown -R root:root /export/apps/resfinder/4.6.0</code>
+$ sudo chown -R root:root /export/apps/resfinder/4.7.2</code>