repeatmasker-software
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| Next revision | Previous revision | ||
| repeatmasker-software [2020/11/01 15:02] – created aorth | repeatmasker-software [2021/12/14 09:17] (current) – aorth | ||
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| ===== Information ===== | ===== Information ===== | ||
| - | * Version: 4.1.1 | + | * Version: 4.1.2-p1 |
| * Added: February, 2015 | * Added: February, 2015 | ||
| - | * Updated: | + | * Updated: |
| * Link: http:// | * Link: http:// | ||
| Line 15: | Line 15: | ||
| Load one version into your environment and run it: | Load one version into your environment and run it: | ||
| - | < | + | < |
| $ RepeatMasker</ | $ RepeatMasker</ | ||
| Line 22: | Line 22: | ||
| < | < | ||
| - | $ wget http:// | + | $ wget http:// |
| - | $ tar xf RepeatMasker-4.1.1.tar.gz | + | $ tar xf RepeatMasker-4.1.2-p1.tar.gz |
| - | $ sudo mkdir -p / | + | $ sudo mkdir -p / |
| - | $ sudo chown aorth:aorth / | + | $ sudo chown aorth:aorth / |
| - | $ python3 -m venv / | + | $ python3 -m venv / |
| - | $ source / | + | $ source / |
| - | $ pip install h5py | + | $ cp -r RepeatMasker/ |
| - | $ cp -r RepeatMasker/ | + | $ cd / |
| - | # Needs trf/4.0.9 hmmer/3.2.1 rmblast/2.10.0 | + | # Here you have to manually enter the paths to trf 4.0.9, hmmer 3.2.1, and rmblast 2.11.0 |
| - | $ cd / | + | |
| $ perl ./configure | $ perl ./configure | ||
| $ deactivate | $ deactivate | ||
| $ sudo chown -R root:root / | $ sudo chown -R root:root / | ||
repeatmasker-software.1604242970.txt.gz · Last modified: 2020/11/01 15:02 by aorth