ray-software
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ray-software [2014/08/28 12:11] – [Usage] aorth | ray-software [2014/09/26 14:01] – aorth | ||
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* Version: 2.3.1 | * Version: 2.3.1 | ||
* Added: August, 2014 | * Added: August, 2014 | ||
- | * K-mer size: 32 (default at compile time) | + | * Max K-mer length: 32 (default at compile time) |
+ | * Default K-mer lenght: 21 | ||
* Link: http:// | * Link: http:// | ||
Line 16: | Line 17: | ||
=== See the built-in help === | === See the built-in help === | ||
< | < | ||
+ | |||
+ | === Example batch job === | ||
+ | Running Ray on two different nodes via MPI with a total of 15 CPUs: | ||
+ | |||
+ | < | ||
+ | #SBATCH -p batch | ||
+ | #SBATCH -n 15 | ||
+ | #SBATCH -J ray | ||
+ | #SBATCH --nodes=2 | ||
+ | |||
+ | module load ray/2.3.1 | ||
+ | |||
+ | readonly DATADIR=~/ | ||
+ | readonly OUTDIR=~/ | ||
+ | |||
+ | # mpirun gets the number of processors from SLURM | ||
+ | mpirun Ray -k 27 -p ${DATADIR}/ | ||
+ | |||
+ | Save in a file and submit using '' | ||
===== Installation ====== | ===== Installation ====== | ||
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
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scl enable devtoolset-1.1 bash | scl enable devtoolset-1.1 bash | ||
module load openmpi/ | module load openmpi/ | ||
- | make PREFIX=/ | + | make PREFIX=/ |
+ | strip Ray | ||
sudo mkdir -p / | sudo mkdir -p / | ||
sudo chown -R aorth:aorth / | sudo chown -R aorth:aorth / | ||
make install | make install | ||
sudo chown -R root:root / | sudo chown -R root:root / |
ray-software.txt · Last modified: 2015/06/09 16:37 by aorth