raxml-software
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raxml-software [2014/05/27 12:40] – created aorth | raxml-software [2018/09/16 07:45] (current) – aorth | ||
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====== RAxML ====== | ====== RAxML ====== | ||
+ | RAxML (Randomized Axelerated Maximum Likelihood) is a program for sequential and parallel Maximum Likelihood based inference of large phylogenetic trees. | ||
===== Information ===== | ===== Information ===== | ||
- | * Version: 8.0.23 | + | * Latest |
* Added: June, 2011 | * Added: June, 2011 | ||
- | * Updated: | + | * Updated: |
* Link: https:// | * Link: https:// | ||
- | ===== Usage ===== | + | === Usage === |
- | === See versions of RAxML which are available === | + | Show all available |
- | < | + | |
- | ===== Installation | + | < |
+ | |||
+ | Load one version into your environment and run it: | ||
+ | |||
+ | < | ||
+ | $ raxmlHPC-PTHREADS-AVX</ | ||
+ | |||
+ | Note: you should set the number of concurrent CPU threads using the '' | ||
+ | |||
+ | < | ||
+ | |||
+ | === Installation === | ||
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | cd standard-RAxML | + | $ wget https:// |
- | scl enable devtoolset-1.1 bash | + | $ tar xf v8.2.12.tar.gz |
- | git checkout v8.0.23 | + | $ cd standard-RAxML-8.2.12 |
- | make -f Makefile.AVX.gcc | + | $ make -f Makefile.SSE3.gcc |
- | rm *.o | + | $ make -f Makefile.SSE3.PTHREADS.gcc |
- | make -f Makefile.AVX.PTHREADS.gcc | + | $ make -f Makefile.AVX.gcc |
- | sudo mkdir -p / | + | $ make -f Makefile.AVX.PTHREADS.gcc |
- | sudo cp raxmlHPC-* / | + | $ sudo mkdir -p / |
+ | $ sudo cp raxmlHPC-* / |
raxml-software.1401194446.txt.gz · Last modified: 2014/05/27 12:40 by aorth