Differences

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--- raxml-software [2018/09/16 07:34] – aorth
+++ raxml-software [2025/05/14 12:03] (current) – aorth
@@ Line 6: / Line 6: @@
   * Latest Version: 8.2.12
   * Added: June, 2011
-  * Updated: September, 2018
+  * Updated: May, 2025
   * Link: https://github.com/stamatak/standard-RAxML
 === Usage ===
-Show all available versions of RAxML:
+Show all available versions:
 <code>$ module avail RAxML</code>
@@ Line 18: / Line 18: @@
 <code>$ module load RAxML/8.2.12
-$ raxmlHPC-PTHREADS-AVX</code>
+$ raxmlHPC-PTHREADS-AVX2</code>
 Note: you should set the number of concurrent CPU threads using the ''-T'' option. For example, if you have requested five CPUs in your SLURM batch script, you can tell RAxML to use five threads:
-<code>$ raxmlHPC-PTHREADS-AVX -T 5</code>
+<code>$ raxmlHPC-PTHREADS-AVX2 -T 5</code>
 === Installation ===
@@ Line 32: / Line 32: @@
 $ cd standard-RAxML-8.2.12
 $ make -f Makefile.SSE3.gcc
+$ make -f Makefile.SSE3.PTHREADS.gcc
 $ make -f Makefile.AVX.gcc
 $ make -f Makefile.AVX.PTHREADS.gcc
+$ make -f Makefile.AVX2.gcc
+$ make -f Makefile.AVX2.PTHREADS.gcc
 $ sudo mkdir -p /export/apps/RAxML/8.2.12/bin
 $ sudo cp raxmlHPC-* /export/apps/RAxML/8.2.12/bin</code>