raxml-software
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raxml-software [2015/07/27 07:18] – joguya | raxml-software [2018/09/16 07:34] – aorth | ||
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RAxML (Randomized Axelerated Maximum Likelihood) is a program for sequential and parallel Maximum Likelihood based inference of large phylogenetic trees. | RAxML (Randomized Axelerated Maximum Likelihood) is a program for sequential and parallel Maximum Likelihood based inference of large phylogenetic trees. | ||
- | | + | ===== Information ===== |
+ | |||
+ | | ||
* Added: June, 2011 | * Added: June, 2011 | ||
- | * Updated: | + | * Updated: |
* Link: https:// | * Link: https:// | ||
=== Usage === | === Usage === | ||
- | * Show all available versions of RAxML< | + | |
- | | + | Show all available versions of RAxML: |
+ | |||
+ | < | ||
+ | |||
+ | Load one version into your environment and run it: | ||
+ | |||
+ | < | ||
+ | $ raxmlHPC-PTHREADS-AVX</ | ||
+ | |||
+ | Note: you should set the number of concurrent CPU threads using the '' | ||
+ | |||
+ | < | ||
=== Installation === | === Installation === | ||
- | *Notes from the sysadmin during installation:< | + | Notes from the sysadmin during installation: |
- | wget https:// | + | |
- | tar -xvf v8.2.0.tar.gz | + | < |
- | cd standard-RAxML-8.2.0/ | + | $ wget https:// |
- | make -f Makefile.AVX.gcc | + | $ tar xf v8.2.12.tar.gz |
- | rm *.o | + | $ cd standard-RAxML-8.2.12 |
- | make -f Makefile.AVX.PTHREADS.gcc | + | $ make -f Makefile.SSE3.gcc |
- | rm *.o | + | $ make -f Makefile.AVX.gcc |
- | module load openmpi/ | + | $ make -f Makefile.AVX.PTHREADS.gcc |
- | make -f Makefile.MPI.gcc | + | $ sudo mkdir -p / |
- | rm *.o | + | $ sudo cp raxmlHPC-* / |
- | sudo mkdir -p / | + | |
- | sudo cp -v raxmlHPC* / | + | |
- | </ | + |
raxml-software.txt · Last modified: 2018/09/16 07:45 by aorth