raxml-software
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raxml-software [2014/12/08 10:06] – joguya | raxml-software [2018/09/16 07:02] – aorth | ||
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====== RAxML ====== | ====== RAxML ====== | ||
+ | RAxML (Randomized Axelerated Maximum Likelihood) is a program for sequential and parallel Maximum Likelihood based inference of large phylogenetic trees. | ||
- | ===== RAxML 8.0.23 | + | ===== Information |
- | ==== Information | + | |
- | * Version: 8.0.23 | + | * Latest |
* Added: June, 2011 | * Added: June, 2011 | ||
- | * Updated: | + | * Updated: |
* Link: https:// | * Link: https:// | ||
- | ===== Usage ===== | + | === Usage === |
+ | * Show all available versions of RAxML< | ||
+ | * Load RAxML module: < | ||
- | === See versions of RAxML which are available === | + | === Installation === |
- | < | + | *Notes from the sysadmin during installation:< |
- | + | wget https:// | |
- | ===== Installation | + | tar -xvf v8.2.0.tar.gz |
- | Notes from the sysadmin during installation: | + | cd standard-RAxML-8.2.0/ |
- | + | ||
- | < | + | |
- | cd standard-RAxML | + | |
- | scl enable devtoolset-1.1 bash | + | |
- | git checkout v8.0.23 | + | |
make -f Makefile.AVX.gcc | make -f Makefile.AVX.gcc | ||
rm *.o | rm *.o | ||
make -f Makefile.AVX.PTHREADS.gcc | make -f Makefile.AVX.PTHREADS.gcc | ||
- | sudo mkdir -p / | + | rm *.o |
- | sudo cp raxmlHPC-* / | + | module load openmpi/ |
+ | make -f Makefile.MPI.gcc | ||
+ | rm *.o | ||
+ | sudo mkdir -p / | ||
+ | sudo cp -v raxmlHPC* / | ||
+ | </ |
raxml-software.txt · Last modified: 2018/09/16 07:45 by aorth